Source Name: 2024_Koch

Literature Information

Literature Title Chromatographic Determination of Permeability-Relevant Lipophilicity Facilitates Rapid Analysis of Macrocyclic Peptide Scaffolds
Doi 10.1021/acs.jmedchem.4c01956
Research Group
  1. University of California Santa Cruz
  2. Revolution Medicines, Inc.
  3. Mitsubishi Tanabe Pharma Corporation
  4. -
  5. -
  6. -
Data Number 54
Minimum Molecular Weight 915.2
Maximum Molecular Weight 1105.5


Assay Information 1

Assay Type PAMPA
Permeability Type logPe
Membrane Measurement Direction (Exclude PAMPA) -
Assay Detail PAMPA was used to determine the passive permeability of these compounds with modifications and calculations as described in Naylor et al. and here. Briefly, pure compound stocks (150 µL, 1 µM, 5% DMSO in phosphate-buffer saline (PBS) pH 7.4) were added to a 96-well donor plate with 0.45 µm hydrophobic Immobilon-P membranes (Millipore MAIPNTR10) pre-soaked with a 1% solution of lecithin in n-dodecane. The donor plate was loaded in to a 96-well Teflon acceptor plate (Millipore MSSACCEPTOR) with 300 µL of PBS with 5% DMSO. After a ~15 h, the acceptor and donor plates were separated, and 50 µL was collect from each well. Samples were diluted with 50 µL methanol and analyzed by LC/MS as described above. Samples were run in triplicate with 1 µM propranolol as a control. Exact time in seconds was used in the calculations. Error was calculated as standard deviation.


Assay Information 2

Assay Type -
Permeability Type -
Membrane Measurement Direction (Exclude PAMPA) -
Assay Detail -