Source Name: 2012_Rand

Literature Information

Literature Title Optimizing PK properties of cyclic peptides: the effect of side chain substitutions on permeability and clearance
Doi 10.1039/C2MD20203D
Research Group
  1. Department of Chemistry and Biochemistry, University of California Santa Cruz
  2. Department of Pharmaceutical Chemistry, University of California San Francisco
  3. Pharmacokinetics and Drug Metabolism, Groton Laboratories, Pfizer Inc.
  4. Worldwide Medicinal Chemistry, Groton Laboratories, Pfizer Inc.
  5. Worldwide Medicinal Chemistry, Cambridge Laboratories, Pfizer Inc.
  6. -
  7. -
  8. -
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Data Number 16
Minimum Molecular Weight 712.9
Maximum Molecular Weight 828.1


Assay Information 1

Assay Type RRCK
Permeability Type logPapp
Membrane Measurement Direction (Exclude PAMPA) Apical to Basolateral (AB)
Assay Detail Cell permeability was determined using RRCK cells (Pfizer, Inc. Groton, CT). RRCK cells were generated in house as a subclone of Madin-Darby Canine Kidney wild-type (MDCK-WT) cells that displayed low expression of endogenous p-glycoprotein (~ 1–2% of MDCK-WT cells, based on mRNA level). Cells were cultured in minimal essential medium α with supplements and passaged when 70–80% confluent. Cell monolayer flux studies were conducted five days after seeding in 24-well transwell inserts (RRCK in 1.0 µm pore size (Becton Dickinson, Cowley, UK) at 4.2 x 10^4 cells/cm^2. Donor and acceptor solutions were prepared from HBSS containing HEPES at 20 mM, pH 7.4.
Stock solutions of test compounds, prepared at 10 mM in DMSO, were used to prepare donor solutions of 2 µM compound in 0.05% (v/v) DMSO. Apparent permeability (Papp) was determined in apical to basolateral (AB) direction in triplicate by incubating with compound for 2 h at 37 °C. Samples of the medium were analyzed by liquid-chromatography tandem mass spectrometry (LC-MS/MS). Papp values were calculated according to the equation Papp = (Q/t) x 1/C_0 x 1/A, where Q is the sampled concentration in the acceptor compartment, t is the incubation time, C_0 is the initial concentration in the donor compartment and A is the area of the filter of the transwell plate.


Assay Information 2

Assay Type Caco2
Permeability Type logPapp
Membrane Measurement Direction (Exclude PAMPA) Apical to Basolateral (AB)
Assay Detail Caco-2 cells were obtained from American Type Culture Collection (Rockville, MD). Cell culture medium (Dulbecco’s Modified Eagles Medium with 20% fetal bovine serum, 1% Non-essential amino acids, 1% Glutamax-1 and 0.08% gentamycin) and Hank’s balanced salt solution (HBSS) with 25 mM D-glucose monohydrate, 1.25 mM CaCl2 and 0.5 mM MgCl2; pH 7.4 or pH 6.5) obtained from Invitrogen (Grand Island, NY). Both protease inhibitor and albumin from bovine serum were obtained from Sigma Aldrich. Transwell permeable support 24-well cell culture plates (PET membrane, 0.33 cm2 growth area, 1.0 µm pore size) were obtained from BD Biosciences (Franklin Lakes, NJ). Transepithelial electrical resistance (TEER) was measured using EVOM from World Precision Instruments. Caco-2 cells were cultured at 37 °C with cell culture medium in an atmosphere of 10% CO2 and 90% relative humidity incubator. The cells were passaged upon reaching approximately 90% confluence from T-flasks using 0.25% trypsin-EDTA. Caco-2 cells were seeded onto polycarbonate membranes with 60,000 cells/well. The individual feeding tray wells received 1.0 mL of cell culture medium. The cell culture medium was changed bi-weekly. Caco-2 cells monolayers were used for experimentation 21-days post seeding. An apical→basolateral (A→B) assay was performed to assess the Papp of test compounds in the absorptive transport direction (Papp, A→B). Transport was determined under conditions in which HBSS (pH 6.5 with protease inhibitor) was used in A compartment and HBSS [pH 7.4 with 0.4% bovine serum albumin (BSA) and protease inhibitor] was used in B compartment. Protease inhibitor was added to both pH 6.5 and 7.4 HBSS at a ratio of 400 µL per 100 mL of buffer. These buffers are referred as “modified 6.5 HBSS” and “modified 7.4 HBSS”. Starting compound solutions were made from 10mM DMSO stock solution diluted to 10 µM in modified pH 6.5 HBSS. Silanized glass tubes were used for stock solutions to limit non-specific binding.
Experiments were initiated by removing the cell culture medium from the apical and basolateral sides of the cell monolayers. Then 0.3 mL of modified pH 6.5 HBSS was placed in the A compartment and 1.0 mL of modified pH 7.4 HBSS was placed in the B compartment, and the monolayers were preincubated for 15 min at 37°C . After 15 min, HBSS was removed from both compartments. To conduct an A→B assay, 0.3 mL of compound solution in modified pH6.5 HBSS was added to the A compartment and 1.0 mL of modified pH 7.4 HBSS was added to the B compartment. Experiments were carried out in triplicate. Monolayers were incubated for 2 hours 30 min at 37°C with continuous agitation (60 rpm), then the basolateral samples were collected. The assay samples collected were analyzed by LC-MS/MS. TEER was measured across the cell membranes at the beginning and the end of experiments to indicate the integrity of the Caco-2 monolayers (TEER >350Ω.cm2). The TEER (Ω.cm^2) values of the cell monolayers were calculated according to the following equation: Resistance of unit area = resistance (Ω) X effective membrane area (cm^2). Absorptive transport were represented as permeability values (Papp x 10^-6 cm/sec), calculated using the equation: Papp = {1 / (Area * C_D(0))} * {dM_r / dt} where Area is the surface area of the cell monolayer (0.33 cm^2), C_D(0) is the initial concentration of compound applied to the donor chamber, t is time, M_r is the mass of compound in the receiver compartment, and dM_r/dt is the flux of the compound across the cell monolayer.